On the other hand, Kohli had an average Test series in the West Indies and after the first Test against South Africa in Vizag, his points tally dropped below 900 for the first time since January 2018.
This is Kohli's first hundred of this year, having scored two fifties in the eight innings that he has played in 2019.
A nervy Theunis de Bruyn opened his account with a missed run out chance and then Kohli dropped him at slip but the batsman could not make the most of his reprieves.
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South Africa handiest took two wickets on day two of the match and now face an uphill fight to steer nice of defeat.
Overall, this was Kohli's 40th hundred in worldwide cricket as a captain. It's about getting his tank up and hopefully, we'll see if he plays the next Test.
Virat Kohli now has 29 wins from 49 matches as Test captain, while MS Dhoni had 27 Test wins in 60 matches.
Apart fromKohli, MayankAgarwal also scored a ton, while CheteshwarPujara and Ajinkya Rahane scored fifties each as India crossed the 450-run mark in the first innings.
South Africa were dismissed for 189 after following-on in the final session of day four in Pune, as the hosts took an unassailable 2-0 lead in the three-match series.