A Red Crescent report tracking the humanitarian response in Bangladesh stated: "The current flood situation is likely to worsen in the coming days, as all major rivers in the affected districts are flowing above the danger mark with a rising trend". A total of 43 people are injured and 30 others are missing.
The Kosi has been a serious concern for both India and Nepal since it broke its banks in 2008 and changed course, submerging swathes of land and affecting more than 2 million people in India's Bihar state.
Thapa said people near the dam and in the downstream had been asked to move to safety.
In southeast Nepal, water levels on the Kosi river, which flows into Bihar, had receded, a district official said.
Nepal's Department of Hydrology and Meteorology warned of further floods and landslides as it predicted heavy rainfall would continue for two to three days in several parts of the country.
The June to September monsoon causes widespread death and destruction across South Asia each year.
'There are the challenges of resettlement of the displaced as many houses. have been swept away.
"There is a high risk of possible outbreaks of different water-borne diseases like diarrhea, dysentery, dengue, typhoid among others", Ghanashyam Pokharel, health official at Epidemiology and Disease Control Division, told Xinhua.
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At least 14 people were killed, including 13 soldiers, according to a statement from the chief minister's office.
A Water Development Board official said about 40,000 people have been affected, mostly with their homes submerged.
The state's Kaziranga National Park, a UNESCO-recognised reserve and home to two-thirds of the world's one-horned rhinos, has also been seriously affected by the weather.
Khanal said that the rainfall eased in some areas, like Kathmandu, but some rivers in the eastern part of the country were still above the flood stage.
Heavy rains started in Nepal on Thursday, July 11.
Thousands of Rohingya have been left without shelter because of the heavy rains.
And hilly southern districts like Chattogram and Cox's Bazar - together home to almost one million Rohingya refugees - are threatened by flash floods and landslides.
Displaced refugees said they were suffering as rain disrupted logistics and daily activity in the camps. "Rains and gusty wind have made our life miserable".
Bangladesh's Cox's Bazar - where more than a million Rohingya refugees are encamped after fleeing a military crackdown in Myanmar - has been hit by at least 58.5cm of rain this month.